pmPlotSignature: Plot mutation signatures from pmsignature output

Description Usage Arguments Value Examples

View source: R/pm_plot.R

Description

Plot mutation signatures from pmsignature output

Usage

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pmPlotSignature(inputParam, sigOrder = NULL, colorList = NULL, ...)

Arguments

inputParam

a estimatedParameters S4 class output by the pmsignature.

sigOrder

the order of signatures if needed (default: NULL).

colorList

a list of color to highlight the signatures (default: NULL).

...

additional arguments passed on to visPMS.

Value

a plot object containing all mutational signatures

Examples

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load(system.file("extdata/sample.rdata", package="HiLDA"))
Param <- pmgetSignature(G, K = 3)
pmPlotSignature(Param)

HiLDA documentation built on Nov. 8, 2020, 11:09 p.m.