MutationFeatureData-class: An S4 class representing the mutation data

In HiLDA: Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation

Description

An S4 class representing the mutation data

Slots

featureVectorList

a list of feature vectors actually observed in the input mutation data

sampleList

a list of sample names observed in the input mutation data

countData

a matrix representing the number of mutations and samples. The (1st, 2nd, 3rd) columns are for (mutation pattern index, sample index, frequencies).

mutationPosition

a data frame containing position and mutations

HiLDA documentation built on Nov. 8, 2020, 11:09 p.m.