Files in HiLDA

Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation

README.md R/vis_signature.R R/RcppExports.R R/read_file.R R/hilda_test.R R/hilda_diagnosis.R R/class.R R/pm_getSignature.R R/hilda_plot.R R/pm_plot.R vignettes/HiLDA.Rmd man/convertToTurbo_Q.Rd man/getLogLikelihoodC.Rd man/calcPMSLikelihood.Rd man/hildaDiffPlot.Rd man/pmMultiBarplot.Rd man/hildaRhat.Rd man/pmPlotSignature.Rd man/hildaTest.Rd man/pmBarplot.Rd man/PMSboundary.Rd man/convertFromTurbo_F.Rd man/hildaLocalResult.Rd man/mySquareEM.Rd man/updateTheta_NormalizedC.Rd man/pmgetSignature.Rd man/hildaPlotSignature.Rd man/visPMS.Rd man/EstimatedParameters-class.Rd man/hildaGlobalResult.Rd man/convertToTurbo_F.Rd man/updateMstepFQC.Rd man/MutationFeatureData-class.Rd man/hildaBarplot.Rd man/boundaryTurbo_Q.Rd man/getMutationFeatureVector.Rd man/convertFromTurbo_Q.Rd man/updatePMSParam.Rd man/MetaInformation-class.Rd man/boundaryTurbo_F.Rd man/hildaReadMPFile.Rd tests/testthat.R tests/testthat/test_hilda.R inst/doc/HiLDA.R inst/doc/HiLDA.Rmd inst/script/use_esophageal.R inst/script/use_sampledata.R inst/script/use_hildaLocal.R