IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Package details

AuthorMike Smith [aut, cre]
Bioconductor views DataImport QualityControl Sequencing
MaintainerMike Smith <[email protected]>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the IONiseR package in your browser

Any scripts or data that you put into this service are public.

IONiseR documentation built on Nov. 1, 2018, 5 a.m.