fastq2D: Extract 2D reads

In IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

Description

This generic function accesses the fastq slot stored in an object derived from the Fast5Summary class, and returns only the 2D reads.

Usage

fastq2D(x)

Arguments

x	Object of class Fast5Summary

Value

A ShortReadQ object

Examples

if( require(minionSummaryData) ) {
   data(s.typhi.rep2, package = 'minionSummaryData')
   fastq2D( s.typhi.rep2 )
}

IONiseR documentation built on Nov. 8, 2020, 6 p.m.