Description Usage Arguments Value Examples
View source: R/plotting_kmers.R
Plots
1 2 | plotKmerFrequencyCorrelation(summaryData, kmerLength = 5,
groupedMinutes = 10, only2D = TRUE)
|
summaryData |
Object of class Fast5Summary. |
kmerLength |
Specifies the length of kmers to compare. Defaults to 5 given the current pentamer reading nature of the nanopores. |
groupedMinutes |
Defines how many minutes each grouping of reads spans. |
only2D |
Logical. If TRUE kmers are computed for only full 2D reads. If FALSE 2D reads are ignored and all available template and complement strands are used. |
Returns an object of class gg
representing the plot.
1 2 3 4 | if( require(minionSummaryData) ) {
data(s.typhi.rep3, package = 'minionSummaryData')
plotKmerFrequencyCorrelation( s.typhi.rep3, only2D = FALSE )
}
|
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