ITALICS: ITALICS

A Method to normalize of Affymetrix GeneChip Human Mapping 100K and 500K set

Author
Guillem Rigaill, Philippe Hupe
Date of publication
None
Maintainer
Guillem Rigaill <italics@curie.fr>
License
GPL-2
Version
2.34.0
URLs

View on Bioconductor

Man pages

GLAD.GLAD
GLAD analysis
ITALICSNew
Affymetrix SNP chip normalization
ITALICSTrain
ITALICS training
Model.GetConfDat
Elimination of badly predicted probes
Model.GetCorrection
Correction
Model.GetEffet
Effet
Model.GetModel
Regression Model
Model.GetResidu
Correction
New.AddInfo
add info to quartet annotation
New.fromQuartetToSnp
Compute the copy number of each SNP from its quartets...
New.fromSnpToQuartet
Function to get from snp to quartet
New.getQuartet
Function to retrieve the information of each quartet
New.getSnpInfo
Function to retrieve the chromosome and the position of each...
New.readQuartetCopyNb
Read PM probes of selected quartets and compute the quartet...

Files in this package

ITALICS/CHANGELOG
ITALICS/DESCRIPTION
ITALICS/NAMESPACE
ITALICS/R
ITALICS/R/GLAD.GLAD.R
ITALICS/R/ITALICSNew.R
ITALICS/R/ITALICSTrain.R
ITALICS/R/Model.getCorrection.R
ITALICS/R/Model.getModel.R
ITALICS/R/New.AddInfo.R
ITALICS/R/New.FromQuartetToSnp.R
ITALICS/R/New.GetSnpInfo.R
ITALICS/R/New.ReadQuartetCopyNb.R
ITALICS/R/New.fromSnpToQuartet.R
ITALICS/R/New.getQuartet.R
ITALICS/R/zzz.R
ITALICS/build
ITALICS/build/vignette.rds
ITALICS/inst
ITALICS/inst/doc
ITALICS/inst/doc/ITALICS.R
ITALICS/inst/doc/ITALICS.Rnw
ITALICS/inst/doc/ITALICS.pdf
ITALICS/inst/scripts
ITALICS/inst/scripts/tmp_filterBkp2.R
ITALICS/inst/scripts/tmp_filterBkpStep2.R
ITALICS/man
ITALICS/man/GLAD.GLAD.Rd
ITALICS/man/ITALICSNew.Rd
ITALICS/man/ITALICSTrain.Rd
ITALICS/man/Model.GetConfDat.Rd
ITALICS/man/Model.GetCorrection.Rd
ITALICS/man/Model.GetEffet.Rd
ITALICS/man/Model.GetModel.Rd
ITALICS/man/Model.GetResidu.Rd
ITALICS/man/New.AddInfo.Rd
ITALICS/man/New.fromQuartetToSnp.Rd
ITALICS/man/New.fromSnpToQuartet.Rd
ITALICS/man/New.getQuartet.Rd
ITALICS/man/New.getSnpInfo.Rd
ITALICS/man/New.readQuartetCopyNb.Rd
ITALICS/vignettes
ITALICS/vignettes/Bkp.jpeg
ITALICS/vignettes/ITALICS-006.eps
ITALICS/vignettes/ITALICS-006.pdf
ITALICS/vignettes/ITALICS.Rnw
ITALICS/vignettes/biblio.bib