New.getQuartet: Function to retrieve the information of each quartet
In ITALICS: ITALICS
Description
Usage
Arguments
Value
Note
Author(s)
Source
Description
This function retrieve information of each quartet.
This function use the pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty and pd.mapping250k.nsp package.
Usage
1
getQuartet(pkgname, snpInfo)
Arguments
pkgname
the chip type pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty or pd.mapping250k.nsp
snpInfo
a data frame containing SNPs position along the genome
Value
return a list with two fields.
fid : containing the position of each quartet on the CEL file.
quartetInfo : a data fame containing the columns : fsetid, fid, FL (fragment length) and GC (content of the quartet)
Note
People interested in tools dealing with array CGH analysis and DNA copy number analysis can
visit our web-page http://bioinfo.curie.fr.
Author(s)
Guillem Rigaill, italics@curie.fr.
Source
Institut Curie, italics@curie.fr.
ITALICS documentation built on Nov. 8, 2020, 6:48 p.m.
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Description Usage Arguments Value Note Author(s) Source
Description
This function retrieve information of each quartet. This function use the pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty and pd.mapping250k.nsp package.
Usage
1 | getQuartet(pkgname, snpInfo)
|
Arguments
pkgname |
the chip type pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty or pd.mapping250k.nsp |
snpInfo |
a data frame containing SNPs position along the genome |
Value
return a list with two fields. fid : containing the position of each quartet on the CEL file. quartetInfo : a data fame containing the columns : fsetid, fid, FL (fragment length) and GC (content of the quartet)
Note
People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.
Author(s)
Guillem Rigaill, italics@curie.fr.
Source
Institut Curie, italics@curie.fr.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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