New.getSnpInfo: Function to retrieve the chromosome and the position of each...
In ITALICS: ITALICS
Description
Usage
Arguments
Value
Note
Author(s)
Source
Description
This function retrieve the chromosome and position in bp of each SNP of a given Affymetrix SNP array.
This function use the pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty and pd.mapping250k.nsp package.
Usage
1
getSnpInfo(pkgname)
Arguments
pkgname
the chip type pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty or pd.mapping250k.nsp
Value
Return a data.frame with five columns : fsetid, dbsnp_rs_id, Chr, X and fragment_length corresponding to the fsetid, the rs_id, the chromosome,
the position on the chromosome and the PCR amplified fragment length respectively.
Note
People interested in tools dealing with array CGH analysis and DNA copy number analysis can
visit our web-page http://bioinfo.curie.fr.
Author(s)
Guillem Rigaill, italics@curie.fr.
Source
Institut Curie, italics@curie.fr.
ITALICS documentation built on Nov. 8, 2020, 6:48 p.m.
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Description Usage Arguments Value Note Author(s) Source
Description
This function retrieve the chromosome and position in bp of each SNP of a given Affymetrix SNP array. This function use the pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty and pd.mapping250k.nsp package.
Usage
1 | getSnpInfo(pkgname)
|
Arguments
pkgname |
the chip type pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty or pd.mapping250k.nsp |
Value
Return a data.frame with five columns : fsetid, dbsnp_rs_id, Chr, X and fragment_length corresponding to the fsetid, the rs_id, the chromosome, the position on the chromosome and the PCR amplified fragment length respectively.
Note
People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.
Author(s)
Guillem Rigaill, italics@curie.fr.
Source
Institut Curie, italics@curie.fr.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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