New.fromSnpToQuartet: Function to get from snp to quartet

In ITALICS: ITALICS

Description

This function put the smoothing value of each SNP in front of its corresponding quartet in the quartetInfo data.frame.

Usage

 fromSnpToQuartet(quartetInfo, profilSNP)

Arguments

quartetInfo	a data frame containing all the quartet values plus there GC content, fragment length and GC content and Quartet effect
profilSNP	a data frame, corresponding to the profileValues argument of a profilCGH object (see GLAD)

Value

return the data.frame quartetInfo with an additionnal column: "Smoothing" corresponding to the estimated smoothing value.

Note

People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.

Author(s)

Guillem Rigaill, [e-mail].

Source

Institut Curie, [e-mail].

ITALICS documentation built on Nov. 8, 2020, 6:48 p.m.