InteractionSet: Base Classes for Storing Genomic Interaction Data

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Package details

AuthorAaron Lun [aut, cre], Malcolm Perry [aut], Elizabeth Ing-Simmons [aut]
Bioconductor views DataRepresentation HiC Infrastructure Software
MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
LicenseGPL-3
Version1.18.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("InteractionSet")

Try the InteractionSet package in your browser

Any scripts or data that you put into this service are public.

InteractionSet documentation built on April 17, 2021, 6 p.m.