Files in JunctionSeq
JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
src/DESeq2.cpp
src/Makevars.win
src/RcppExports.cpp
src/Makevars
R/adapted.functions.R
R/main.analysis.R
R/main.plotAlt.R
R/00.minor.utils.R
R/file.output.R
R/plotting.helpers.R
R/main.plotGenes.R
R/func.R
R/03.AllClasses.R
R/internal.func.R
R/DESeq2.adapted.cpp.wrappers.R
vignettes/JunctionSeq.Rnw
vignettes/JunctionSeq.bib
vignettes/figs/SHAM1_RG1-wiggle.png
vignettes/figs/junctions.png
vignettes/figs/DAY-wiggle.png
vignettes/figs/final.png
vignettes/figs/fullMultiWig.png
man/writeCompleteResults.Rd
man/estimateJunctionSeqDispersions.Rd
man/readAnnotationData.Rd
man/runJunctionSeqAnalyses.Rd
man/JunctionSeqCountSet-class.Rd
man/estimateEffectSizes.Rd
man/fitJunctionSeqDispersionFunction.Rd
man/testForDiffUsage.Rd
man/setJunctionSeqCompiledSourcePackage.Rd
man/readJunctionSeqCounts.Rd
man/buildAllPlots.Rd
man/buildAllPlotsForGene.Rd
man/writeBedTrack.Rd
man/plotJunctionSeqResultsForGene.Rd
man/defaultColorList.Rd
man/plotMA.Rd
man/plotDispEsts.Rd
man/estimateJunctionSeqSizeFactors.Rd
inst/CITATION
inst/doc/gpl.v3.txt
inst/doc/JunctionSeq.Rnw
inst/doc/JunctionSeq.pdf
inst/extdata/styles.css
