Files in KnowSeq
A R package to extract knowledge by using RNA-seq raw files

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/doc/KnowSeq.Rmd inst/doc/KnowSeq.R inst/doc/KnowSeq.pdf inst/script/KnowSeqExample.R
inst/extdata/GSE74251.csv
inst/extdata/expressionExample.RData
inst/extdata/Genes_length_Homo_Sapiens.csv
inst/extdata/countFiles/mergedCountsInfo.csv
inst/extdata/countFiles/SRR3541299/SRR3541299.count
inst/extdata/countFiles/SRR2753163/SRR2753163.count
inst/extdata/countFiles/SRR3541300/SRR3541300.count
inst/extdata/countFiles/SRR2753160/SRR2753160.count
inst/extdata/countFiles/SRR2753162/SRR2753162.count
inst/extdata/countFiles/SRR3541298/SRR3541298.count
inst/extdata/countFiles/SRR2753161/SRR2753161.count
inst/extdata/countFiles/SRR3541297/SRR3541297.count
inst/extdata/countFiles/SRR2753159/SRR2753159.count
inst/extdata/countFiles/SRR3541296/SRR3541296.count
vignettes/bibliography.bib
vignettes/KnowSeq.Rmd
vignettes/GOExample.png
vignettes/pathway.png
vignettes/ncbi.png
vignettes/KnowSeqPipeline.png
vignettes/diseaseKRT19.png
vignettes/arrayexpress.png
vignettes/gdc.png
R/rf_CV.R R/knn_CV.R R/tophatAlignment.R R/svm_test.R R/geneOntologyEnrichment.R R/knn_test.R R/downloadPublicSeries.R R/featureSelection.R R/gdcClientDownload.R R/RNAseqQA.R R/plotConfMatrix.R R/hisatAlignment.R R/kallistoAlignment.R R/svm_CV.R R/rawAlignment.R R/dataPlot.R R/rf_test.R R/DEGsToDiseases.R R/countsToMatrix.R R/calculateGeneExpressionValues.R R/fileMove.R R/DEGsPathwayVisualization.R R/sraToFastq.R R/limmaDEGsExtraction.R R/getAnnotationFromEnsembl.R R/batchEffectRemoval.R R/salmonAlignment.R man/knn_CV.Rd man/gdcClientDownload.Rd man/kallistoAlignment.Rd man/knn_test.Rd man/featureSelection.Rd man/DEGsPathwayVisualization.Rd man/svm_test.Rd man/RNAseqQA.Rd man/downloadPublicSeries.Rd man/DEGsToDiseases.Rd man/salmonAlignment.Rd man/svm_CV.Rd man/countsToMatrix.Rd man/getAnnotationFromEnsembl.Rd man/fileMove.Rd man/geneOntologyEnrichment.Rd man/rf_test.Rd man/calculateGeneExpressionValues.Rd man/batchEffectRemoval.Rd man/limmaDEGsExtraction.Rd man/plotConfMatrix.Rd man/rf_CV.Rd man/hisatAlignment.Rd man/tophatAlignment.Rd man/sraToFastq.Rd man/dataPlot.Rd man/rawAlignment.Rd
build/vignette.rds
KnowSeq documentation built on Oct. 31, 2019, 6:05 a.m.