downloadPublicSeries: Download automatically samples from NCBI/GEO and ArrayExpress...
In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
Description
Usage
Arguments
Value
Examples
View source: R/downloadPublicSeries.R
Description
Download automatically samples from series of either microarray and RNA-seq. Furthermore, both NCBI/GEO and ArrayExpress public databases are supported. In the case of Microarray, the raw file are downloaded, if they are available, but for RNA-seq a csv is created with the necessary information to download the samples with the function rawAlignment.
Usage
1
downloadPublicSeries(samplesVector)
Arguments
samplesVector
A vector which contains the different IDs of the wanted series. These IDs are the IDs of the series from NCBI/GEO or ArrayExpress.
Value
Nothing to return.
Examples
1
downloadPublicSeries(c("GSE74251"))
KnowSeq documentation built on April 16, 2021, 6:01 p.m.
R Package Documentation
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Description Usage Arguments Value Examples
View source: R/downloadPublicSeries.R
Description
Download automatically samples from series of either microarray and RNA-seq. Furthermore, both NCBI/GEO and ArrayExpress public databases are supported. In the case of Microarray, the raw file are downloaded, if they are available, but for RNA-seq a csv is created with the necessary information to download the samples with the function rawAlignment.
Usage
1 | downloadPublicSeries(samplesVector)
|
Arguments
samplesVector |
A vector which contains the different IDs of the wanted series. These IDs are the IDs of the series from NCBI/GEO or ArrayExpress. |
Value
Nothing to return.
Examples
1 | downloadPublicSeries(c("GSE74251"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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