DEGsEvidences: DEGsEvidences function returns for each DEG a list of...

In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline

Description

DEGsEvidences function returns for each DEG a list of evidences that correlate it with the studied disease.

Usage

DEGsEvidences(geneList, disease, size = 10, verbose = TRUE)

Arguments

geneList	A list that contains the gene symbols or gene names of the DEGs.
disease	The name of a disease in order to obtain related evidences from target validation by using the DEGs indicated in the geneList parameter.
size	The number of diseases to retrieve from targetValidation
verbose	Boolean that indicates if progress messages are printed to stdout

Value

A list which names are genes from geneList and which contains related evidences for each gene in geneList and indicated disease.

Examples

evidences <- DEGsEvidences(c("KRT19","BRCA1","TYMP"),'cancer')

KnowSeq documentation built on April 16, 2021, 6:01 p.m.