sraToFastq: sraToFastq downloads and converts the sra files to fastq...
In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
Description
Usage
Arguments
Value
Examples
Description
This function downloads and converts the sra files to fastq files by using the URLs indicated through the identifier argument. The function admits both gz and sra formats. This function is used internally by rawAlignment but it can be used separatelly.
Usage
1
sraToFastq(identifier)
Arguments
identifier
A vector that contains a list with the URLs requested.
Value
Nothing.
Examples
1
2
3
# This function needs the download of the pre-compiled tools supplied by KnowSeq.
## Not run: sraToFastq("SRA1")
KnowSeq documentation built on April 16, 2021, 6:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This function downloads and converts the sra files to fastq files by using the URLs indicated through the identifier argument. The function admits both gz and sra formats. This function is used internally by rawAlignment but it can be used separatelly.
Usage
1 | sraToFastq(identifier)
|
Arguments
identifier |
A vector that contains a list with the URLs requested. |
Value
Nothing.
Examples
1 2 3 | # This function needs the download of the pre-compiled tools supplied by KnowSeq.
## Not run: sraToFastq("SRA1")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.