DEGsToDiseases: DEGsToDiseases obtains the information about what diseases...
In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
Description
Usage
Arguments
Value
Examples
View source: R/DEGsToDiseases.R
Description
The function obtains the information about what diseases are related to the DEGs indicated by parameter. For that, the function makes use of the web platforms gene2Diseases and targetValidation.
Usage
1
DEGsToDiseases(geneList, minCitation = 5, size = 10, getEvidences = FALSE)
Arguments
geneList
A list that contains the gene symbols or gene names of the DEGs.
minCitation
Minimum number of citations of each genes in a disease to consider the genes related with the disease.
size
The number of diseases to retrieve from targetValidation
getEvidences
Boolean. If true, for each gene, a list of found evidences for each disease will be returned.
Value
A list which contains the information about the diseases associated to each genes or to a set of genes. If getEvidences is TRUE, found evidences for each case will be returned too.
Examples
1
diseases <- DEGsToDiseases(c("KRT19","BRCA1"),getEvidences = FALSE)
KnowSeq documentation built on April 16, 2021, 6:01 p.m.
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Description Usage Arguments Value Examples
View source: R/DEGsToDiseases.R
Description
The function obtains the information about what diseases are related to the DEGs indicated by parameter. For that, the function makes use of the web platforms gene2Diseases and targetValidation.
Usage
1 | DEGsToDiseases(geneList, minCitation = 5, size = 10, getEvidences = FALSE)
|
Arguments
geneList |
A list that contains the gene symbols or gene names of the DEGs. |
minCitation |
Minimum number of citations of each genes in a disease to consider the genes related with the disease. |
size |
The number of diseases to retrieve from targetValidation |
getEvidences |
Boolean. If true, for each gene, a list of found evidences for each disease will be returned. |
Value
A list which contains the information about the diseases associated to each genes or to a set of genes. If getEvidences is TRUE, found evidences for each case will be returned too.
Examples
1 | diseases <- DEGsToDiseases(c("KRT19","BRCA1"),getEvidences = FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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