API for M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
| Global functions | |
|---|---|
| BrenneckeGetVariableGenes | Man page Source code |
| Consensus_FS | Man page Source code |
| ConvertSetstoTable | Source code |
| M3DropCleanData | Man page Source code |
| M3DropConvertData | Man page Source code |
| M3DropDropoutModels | Man page Source code |
| M3DropExpressionHeatmap | Man page Source code |
| M3DropFeatureSelection | Man page Source code |
| M3DropGetExtremes | Man page Source code |
| M3DropGetHeatmapClusters | Man page Man page |
| M3DropGetHeatmapNames | Man page |
| M3DropGetMarkers | Man page Source code |
| M3DropSimulationTrifecta | Man page Source code |
| M3DropTestShift | Man page Source code |
| M3DropThreeSetVenn | Man page Source code |
| Make_Sim | Source code |
| NBumiCheckFit | Man page Source code |
| NBumiCheckFitFS | Man page Source code |
| NBumiCoexpression | Man page Source code |
| NBumiCompareModels | Man page Source code |
| NBumiConvertData | Man page Source code |
| NBumiConvertToInteger | Man page Source code |
| NBumiFeatureSelectionCombinedDrop | Man page Source code |
| NBumiFeatureSelectionHighVar | Man page Source code |
| NBumiFitBasicModel | Man page Source code |
| NBumiFitDispVsMean | Man page Source code |
| NBumiFitModel | Man page Source code |
| NBumiHVG | Man page Source code |
| NBumiImputeNorm | Man page Source code |
| NBumiSimulationTrifecta | Man page Source code |
| PlaceLabels | Source code |
| PoissonUMIFeatureSelectionDropouts | Man page Source code |
| bg__MakeSimDE | Man page Source code |
| bg__MakeSimDVar | Man page Source code |
| bg__MakeSimData | Man page Source code |
| bg__MakeSimHVar | Man page Source code |
| bg__add_model_to_plot | Man page Source code |
| bg__calc_variables | Man page Source code |
| bg__default_mean2disp | Man page Source code |
| bg__dropout_plot_base | Man page |
| bg__expression_heatmap | Man page |
| bg__filter_cells | Man page Source code |
| bg__fit_MM | Man page |
| bg__fit_ZIFA | Man page Source code |
| bg__fit_gamma | Man page Source code |
| bg__fit_logistic | Man page Source code |
| bg__fit_size_to_var | Man page Source code |
| bg__fitdispersion | Man page Source code |
| bg__get_extreme_residuals | Man page |
| bg__get_mean2disp | Man page Source code |
| bg__get_stats | Man page Source code |
| bg__highlight_genes | Man page |
| bg__horizontal_residuals_MM_log10 | Man page |
| bg__m3dropTraditionalDE | Man page |
| bg__m3dropTraditionalDEShiftDisp | Man page |
| bg__nbumiGroupDE | Man page |
| bg__shift_size | Man page Source code |
| bg__test_DE_K_equiv | Man page Source code |
| bg__var_vs_drop | Man page Source code |
| corFS | Man page Source code |
| giniFS | Man page Source code |
| hidden__Grun_fs | Source code |
| hidden__UQ | Source code |
| hidden__calc_DE_stats_fpr | Source code |
| hidden__calc_DE_stats_simplified | Source code |
| hidden__calc_DE_stats_simplified_singular | Source code |
| hidden__cv2coeffs | Source code |
| hidden__fit_MM_logistic | Source code |
| hidden__fit_MM_lognormal | Source code |
| hidden__ginifs_simple | Source code |
| hidden__normalize | Source code |
| hidden__pca_fs | Source code |
| hidden_add_dropouts | Source code |
| hidden_calc_p | Source code |
| hidden_calc_vals | Source code |
| hidden_fast_AUC_m3drop | Source code |
| hidden_getAUC | Source code |
| hidden_get_K | Source code |
| hidden_m3dropImputeZeros | Source code |
| hidden_nbImputeZeros | Source code |
| hidden_shift_size | Source code |
| irlbaPcaFS | Man page Source code |
| obsolete__calc_DE_stats | Source code |
| obsolete__fit_size_to_drop | Source code |
| obsolete__nbFeatureSelectionDropouts | Source code |
| obsolete__nbFeatureSelectionHighVarDist2Med | Source code |
| obsolete__nbumiFeatureSelectionDropouts | Man page |
| obsolete__nbumiFeatureSelectionHighVarDist2Med | Man page |
| plot.venn.diagram | Source code |
| unfinished__m3dTraditionalDE | Source code |
| unfinished__m3dTraditionalDEShiftDisp | Source code |
| unfinished__nbGroupDE | Source code |
| venn.overlap | Source code |
