NBumi_ConvertToInteger: Turn a matrix of expression values into integer counts
In M3Drop: Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Description
Usage
Arguments
Details
Value
Examples
Description
Reformats a provided expression matrix to be compatible with NBumi modelling.
Usage
1
Arguments
mat
a numeric matrix of expression values (ideally raw UMI counts), columns = samples, rows = genes.
Details
Coerces the provided data to a matrix then rounds all values up (ceiling) to integers and removes all rows where all values are zero.
Value
Rounded, integer matrix of the original data.
Examples
1
2
3
mat <- matrix(rgamma(1000, shape=10, scale=20), ncol=10)
mat_int <- NBumiConvertToInteger(mat)
is.integer(mat_int)
M3Drop documentation built on Nov. 8, 2020, 5:06 p.m.
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Description Usage Arguments Details Value Examples
Description
Reformats a provided expression matrix to be compatible with NBumi modelling.
Usage
1 |
Arguments
mat |
a numeric matrix of expression values (ideally raw UMI counts), columns = samples, rows = genes. |
Details
Coerces the provided data to a matrix then rounds all values up (ceiling) to integers and removes all rows where all values are zero.
Value
Rounded, integer matrix of the original data.
Examples
1 2 3 | mat <- matrix(rgamma(1000, shape=10, scale=20), ncol=10)
mat_int <- NBumiConvertToInteger(mat)
is.integer(mat_int)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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