API for MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
| Global functions | |
|---|---|
| .AggregatePSMstoPeptideIons | Source code |
| .check.input | Source code |
| .checkMulBioMixture | Source code |
| .checkSingleRun | Source code |
| .checkSingleSubject | Source code |
| .checkTechReplicate | Source code |
| .combine.fractions | Source code |
| .issue.checking | Source code |
| .linear.model.fitting | Source code |
| .make.contrast.single | Source code |
| .makeContrast | Source code |
| .mygrad | Source code |
| .proposed.model | Source code |
| .protein.summarization.function | Source code |
| .rhoInit | Source code |
| .updateModel | Source code |
| .vcovLThetaL | Source code |
| MSstatsTMT | Man page |
| MaxQtoMSstatsTMTFormat | Man page Source code |
| OpenMStoMSstatsTMTFormat | Man page Source code |
| PDtoMSstatsTMTFormat | Man page Source code |
| SpectroMinetoMSstatsTMTFormat | Man page Source code |
| annotation.mine | Man page |
| annotation.mq | Man page |
| annotation.pd | Man page |
| dataProcessPlotsTMT | Man page Source code |
| evidence | Man page |
| fit_full_model | Source code |
| fit_full_model_spikedin | Source code |
| fit_reduced_model_mulrun | Source code |
| fit_reduced_model_onerun | Source code |
| fit_reduced_model_techrep | Source code |
| groupComparisonTMT | Man page Source code |
| input.pd | Man page |
| proteinGroups | Man page |
| proteinSummarization | Man page Source code |
| quant.pd.msstats | Man page |
| raw.mine | Man page |
| raw.om | Man page |
| raw.pd | Man page |
| test.pairwise | Man page |
