Man pages for MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
| annotation.mine | Example of annotation file for raw.mine, which is the output... |
| annotation.mq | Example of annotation file for evidence, which is the output... |
| annotation.pd | Example of annotation file for raw.pd, which is the PSM... |
| dataProcessPlotsTMT | Visualization for explanatory data analysis - TMT experiment |
| evidence | Example of output from MaxQuant for TMT-10plex experiments. |
| groupComparisonTMT | Finding differentially abundant proteins across conditions in... |
| input.pd | Example of output from PDtoMSstatsTMTFormat function |
| MaxQtoMSstatsTMTFormat | Generate MSstatsTMT required input format from MaxQuant... |
| MSstatsTMT | MSstatsTMT: A package for protein significance analysis in... |
| OpenMStoMSstatsTMTFormat | Generate MSstatsTMT required input format for OpenMS output |
| PDtoMSstatsTMTFormat | Generate MSstatsTMT required input format from Proteome... |
| proteinGroups | Example of proteinGroups file from MaxQuant for TMT-10plex... |
| proteinSummarization | Summarizing peptide level quantification to protein level... |
| quant.pd.msstats | Example of output from proteinSummarizaiton function |
| raw.mine | Example of output from SpectroMine for TMT-6plex experiments. |
| raw.om | Example of MSstatsTMT report from OpenMS for TMT-10plex... |
| raw.pd | Example of output from Proteome Discoverer 2.2 for TMT-10plex... |
| SpectroMinetoMSstatsTMTFormat | Generate MSstatsTMT required input format for SpectroMine... |
| test.pairwise | Example of output from groupComparisonTMT function |
