raw.mine: Example of output from SpectroMine for TMT-6plex experiments.

In MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Description

Example of SpectroMine PSM sheet. It is the output of SpectroMine and the input for SpectroMinetoMSstatsTMTFormat function, with annotation file. Annotation file should be made by users. It includes peak intensities for 10 proteins among 12 MS runs with TMT-6plex. The important variables are as follows:

Usage

raw.mine

Format

A data frame with 170 rows and 28 variables.

Details

• PG.ProteinAccessions

• P.MoleculeID

• PP.Charge

• R.FileName

• PG.QValue

• PSM.Qvalue

• Channels : PSM.TMT6_126..Raw., ..., PSM.TMT6_131..Raw.

Examples

head(raw.mine)

MSstatsTMT documentation built on Dec. 20, 2020, 2:01 a.m.