proteinGroups: Example of proteinGroups file from MaxQuant for TMT-10plex...
In MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Description
Usage
Format
Details
Examples
Description
Example of proteinGroup.txt file from MaxQuant,
which is identified protein group information file.
It is the input for MaxQtoMSstatsTMTFormat function, with evidence.txt
and annotation file.
It includes identified protein groups for 10 proteins
among 15 MS runs with TMT10.
The important variables are as follows:
Usage
1
Format
A data frame with 1075 rows and 105 variables.
Details
id
Protein.IDs
Only.identified.by.site
Potential.contaminant
Reverse
Examples
1
MSstatsTMT documentation built on Dec. 20, 2020, 2:01 a.m.
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Description Usage Format Details Examples
Description
Example of proteinGroup.txt file from MaxQuant, which is identified protein group information file. It is the input for MaxQtoMSstatsTMTFormat function, with evidence.txt and annotation file. It includes identified protein groups for 10 proteins among 15 MS runs with TMT10. The important variables are as follows:
Usage
1 |
Format
A data frame with 1075 rows and 105 variables.
Details
id
Protein.IDs
Only.identified.by.site
Potential.contaminant
Reverse
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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