evidence: Example of output from MaxQuant for TMT-10plex experiments.

In MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Description

Example of evidence.txt from MaxQuant. It is the input for MaxQtoMSstatsTMTFormat function, with proteinGroups.txt and annotation file. Annotation file should be made by users. It includes peak intensities for 10 proteins among 15 MS runs with TMT10. The important variables are as follows:

Usage

evidence

Format

A data frame with 1075 rows and 105 variables.

Details

• Proteins

• Protein.group.IDs

• Modified.sequence

• Charge

• Raw.file

• Score

• Potential.contaminant

• Reverse

• Channels : Reporter.intensity.corrected.0, ..., Reporter.intensity.corrected.9

Examples

head(evidence)

MSstatsTMT documentation built on Dec. 20, 2020, 2:01 a.m.