raw.pd: Example of output from Proteome Discoverer 2.2 for TMT-10plex...

In MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Description

Example of Proteome discover PSM sheet. It is the input for PDtoMSstatsTMTFormat function, with annotation file. Annotation file should be made by users. It includes peak intensities for 10 proteins among 15 MS runs with TMT-10plex. The variables are as follows:

Usage

raw.pd

Format

A data frame with 2858 rows and 50 variables.

Details

• Master.Protein.Accessions

• Protein.Accessions

• Annotated.Sequence

• Charge

• Ions.Score

• Spectrum.File

• Quan.Info

• Channels : 126, ..., 131

Examples

head(raw.pd)

MSstatsTMT documentation built on Dec. 20, 2020, 2:01 a.m.