API for MTseeker
Bioconductor Tools for Human Mitochondrial Variant Analysis

Global functions
.colorCode	Source code
.cov	Source code
.darken	Source code
.flattenConsequences	Source code
.grToBed	Source code
.halfheight	Source code
.height	Source code
.makeBed	Source code
.mvrToBed	Source code
.mvrlToBed	Source code
.rCRSvsRSRS	Source code
.textbold	Source code
.textcex	Source code
.textloc	Source code
MAlignments	Man page Source code
MAlignments-class	Man page
MAlignments-methods	Man page
MAlignmentsList	Man page Source code
MAlignmentsList-class	Man page
MAlignmentsList-methods	Man page
MTHGVS	Man page Source code
MTcircos	Man page Source code
MTcomplex	Man page Source code
MTcoverage	Man page Source code
MVRanges	Man page Source code
MVRanges-class	Man page
MVRanges-methods	Man page
MVRangesList	Man page Source code
MVRangesList-class	Man page
MVRangesList-methods	Man page
Summary,MAlignments-method	Man page
Summary,MAlignmentsList-method	Man page
anno_rCRS	Man page
annotation,MVRanges-method	Man page
byStrand	Man page Source code
callMT	Man page Source code
callMTVars	Man page Source code
chrominfo.rCRS	Man page
consensusString,MVRanges-method	Man page
consensusString,MVRangesList-method	Man page
coverage,MVRanges-method	Man page
coverage,MVRangesList-method	Man page
encoding,MVRanges-method	Man page
encoding,MVRangesList-method	Man page
fileName,MAlignments-method	Man page
fileName,MAlignmentsList-method	Man page
filt,MVRanges-method	Man page
filt,MVRangesList-method	Man page
filterMT	Man page Source code
filterMTvars	Man page Source code
fixMetadata	Man page Source code
fpFilter_RSRS	Man page
fpFilter_Triska	Man page
genes	Man page
genes,MVRanges-method	Man page
genes,MVRangesList-method	Man page
genome,MVRanges-method	Man page
genome,MVRangesList-method	Man page
genomeCoverage	Man page
genomeCoverage,MAlignmentsList-method	Man page
genomeCoverage,MVRanges-method	Man page
genomeCoverage,MVRangesList-method	Man page
genomeLength	Man page
genomeLength,MAlignments-method	Man page
getAnnotations	Man page
getAnnotations,MVRanges-method	Man page
getAnnotations,MVRangesList-method	Man page
getMT	Man page Source code
granges,MVRangesList-method	Man page
hg19TorCRS	Man page
indexMTGenome	Man page Source code
injectMTVariants	Man page Source code
locateVariants	Man page
locateVariants,MVRanges,missing,missing-method	Man page
locateVariants,MVRangesList,missing,missing-method	Man page
mtAnno	Man page
mtAnno.rCRS	Man page
mtGenes	Man page
mtGenes.rCRS	Man page
plot,MVRanges,ANY-method	Man page
plot,MVRangesList,ANY-method	Man page
plotMTCoverage	Man page Source code
plotStrandedMTCoverage	Man page Source code
pos,MVRanges-method	Man page
predictCoding	Man page
predictCoding,MVRanges,missing,missing,missing-method	Man page
predictCoding,MVRangesList,missing,missing,missing-method	Man page
rCRSeq	Man page
readLength	Man page
readLength,MAlignments-method	Man page
readLength,MAlignmentsList-method	Man page
s4Methods	Man page Source code
scanBamHeader,MAlignments-method	Man page
show,MAlignments-method	Man page
show,MAlignmentsList-method	Man page
show,MVRanges-method	Man page
show,MVRangesList-method	Man page
snpCall,MVRanges-method	Man page
snpCall,MVRangesList-method	Man page
summarizeVariants,MVRanges,missing,missing-method	Man page
summarizeVariants,MVRangesList,missing,missing-method	Man page
tallyVariants,MVRanges-method	Man page
type,MVRanges-method	Man page
validMetadata	Man page Source code