Files in MTseeker
Bioconductor Tools for Human Mitochondrial Variant Analysis

Makefile
DESCRIPTION
README.md
NAMESPACE
inst/doc/oncocytomas.R inst/doc/oncocytomas.Rmd
inst/doc/oncocytomas.html
inst/extdata/mitocarta2.R inst/extdata/mtAnno.R
inst/extdata/RSRS.fa
inst/extdata/mtComplexes.svg
inst/extdata/mm10.chrM.fa
inst/extdata/rCRS.R
inst/extdata/rCRS.gff3
inst/extdata/mtColors.csv
inst/extdata/rCRS.fa
inst/extdata/mtCN.png
inst/extdata/hg19.chrM.fa.fai
inst/extdata/mm10.chrM.fa.fai
inst/extdata/rCRS.fa.fai
inst/extdata/hg19.chrM.fa
inst/extdata/biohazard.svg
inst/extdata/RO_NKS_filtered.png
inst/extdata/RSRS.fa.fai
inst/extdata/rCRS_original.fa
inst/extdata/mtAnno.rCRS.bed
inst/extdata/RO_1.png
vignettes/oncocytomas.Rmd
vignettes/RO_NKS_filtered.png
R/mtAnno.R R/getMT.R R/MAlignmentsList.R R/fixMetadata.R R/MTHGVS.R R/injectMTVariants.R R/MAlignments.R R/validMetadata.R R/MTcomplex.R R/MTcoverage.R R/filterMTvars.R R/MTcircos.R R/byStrand.R R/hg19TorCRS.R R/mtGenes.rCRS.R R/indexMTGenome.R R/MVRangesList.R R/mtGenes.R R/filterMT.R R/rCRSeq.R R/s4Methods.R R/callMT.R R/MVRanges.R R/fpFilter_Triska.R R/anno_rCRS.R R/chrominfo.rCRS.R R/fpFilter_RSRS.R man/MTcoverage.Rd man/MAlignmentsList-class.Rd man/getMT.Rd man/anno_rCRS.Rd man/mtGenes.rCRS.Rd man/MTHGVS.Rd man/filterMTvars.Rd man/MVRanges-methods.Rd man/validMetadata.Rd man/indexMTGenome.Rd man/MAlignments-class.Rd man/MVRangesList-class.Rd man/chrominfo.rCRS.Rd man/callMT.Rd man/filterMT.Rd man/MVRangesList-methods.Rd man/rCRSeq.Rd man/mtGenes.Rd man/byStrand.Rd man/MTcircos.Rd man/MVRanges-class.Rd man/MAlignments-methods.Rd man/fpFilter_RSRS.Rd man/fpFilter_Triska.Rd man/MTcomplex.Rd man/fixMetadata.Rd man/injectMTVariants.Rd man/hg19TorCRS.Rd man/MAlignmentsList-methods.Rd man/s4Methods.Rd man/mtAnno.Rd
build/vignette.rds
data/hg19TorCRS.rda
data/anno_rCRS.rda
data/mtGenes.rCRS.rda
data/fpFilter_RSRS.rda
data/mtGenes.rda
data/rCRSeq.rda
data/mtAnno.rCRS.rda
data/chrominfo.rCRS.rda
data/fpFilter_Triska.rda
MTseeker documentation built on Nov. 13, 2018, 6 p.m.