API for MTseeker
Bioconductor Tools for Human Mitochondrial Variant Analysis

Global functions
MAlignments Man page Source code
MAlignments-class Man page
MAlignments-methods Man page
MAlignmentsList Man page Source code
MAlignmentsList-class Man page
MAlignmentsList-methods Man page
MTHGVS Man page Source code
MTcircos Man page Source code
MTcomplex Man page Source code
MTcoverage Man page Source code
MVRanges Man page Source code
MVRanges-class Man page
MVRanges-methods Man page
MVRangesList Man page Source code
MVRangesList-class Man page
MVRangesList-methods Man page
Summary,MAlignments-method Man page
Summary,MAlignmentsList-method Man page
anno_rCRS Man page
annotation,MVRanges-method Man page
byStrand Man page Source code
callMT Man page Source code
callMTVars Man page Source code
chrominfo.rCRS Man page
colorCode Source code
consensusString,MVRanges-method Man page
consensusString,MVRangesList-method Man page
cov Source code
coverage,MVRanges-method Man page
coverage,MVRangesList-method Man page
darken Source code
encoding,MVRanges-method Man page
encoding,MVRangesList-method Man page
fileName,MAlignments-method Man page
fileName,MAlignmentsList-method Man page
filt,MVRanges-method Man page
filt,MVRangesList-method Man page
filterMT Man page Source code
filterMTvars Man page Source code
fixMetadata Man page Source code
flattenConsequences Source code
fpFilter_RSRS Man page
fpFilter_Triska Man page
genes Man page
genes,MVRanges-method Man page
genes,MVRangesList-method Man page
genome,MVRanges-method Man page
genome,MVRangesList-method Man page
genomeCoverage Man page
genomeCoverage,MAlignmentsList-method Man page
genomeCoverage,MVRanges-method Man page
genomeCoverage,MVRangesList-method Man page
genomeLength Man page
genomeLength,MAlignments-method Man page
getAnnotations Man page
getAnnotations,MVRanges-method Man page
getAnnotations,MVRangesList-method Man page
getMT Man page Source code
grToBed Source code
granges,MVRangesList-method Man page
halfheight Source code
height Source code
hg19TorCRS Man page
indexMTGenome Man page Source code
injectMTVariants Man page Source code
locateVariants Man page
locateVariants,MVRanges,missing,missing-method Man page
locateVariants,MVRangesList,missing,missing-method Man page
makeBed Source code
mtAnno Man page
mtAnno.rCRS Man page
mtGenes Man page
mtGenes.rCRS Man page
mvrToBed Source code
mvrlToBed Source code
plot,MVRanges,ANY-method Man page
plot,MVRangesList,ANY-method Man page
plotMTCoverage Man page Source code
plotStrandedMTCoverage Man page Source code
pos,MVRanges-method Man page
predictCoding Man page
predictCoding,MVRanges,missing,missing,missing-method Man page
predictCoding,MVRangesList,missing,missing,missing-method Man page
rCRSeq Man page
rCRSvsRSRS Source code
readLength Man page
readLength,MAlignments-method Man page
readLength,MAlignmentsList-method Man page
s4Methods Man page Source code
scanBamHeader,MAlignments-method Man page
show,MAlignments-method Man page
show,MAlignmentsList-method Man page
show,MVRanges-method Man page
show,MVRangesList-method Man page
snpCall,MVRanges-method Man page
snpCall,MVRangesList-method Man page
summarizeVariants,MVRanges,missing,missing-method Man page
summarizeVariants,MVRangesList,missing,missing-method Man page
tallyVariants,MVRanges-method Man page
textbold Source code
textcex Source code
textloc Source code
type,MVRanges-method Man page
validMetadata Man page Source code
MTseeker documentation built on Nov. 13, 2018, 6 p.m.