MantelCorr: Compute Mantel Cluster Correlations

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Computes Mantel cluster correlations from a (p x n) numeric data matrix (e.g. microarray gene-expression data).

Author
Brian Steinmeyer and William Shannon
Date of publication
None
Maintainer
Brian Steinmeyer <steinmeb@ilya.wustl.edu>
License
GPL (>= 2)
Version
1.44.0

View on Bioconductor

Man pages

ClusterGeneList
Generate Genes from a Cluster List
ClusterList
Generate a Cluster List
DistMatrices
Compute Dissimilarity Matrices
GetClusters
Over-Partition a (p x n) Data Matrix using 'kmeans'
GolubTrain
Golub Training Set
MantelCorrs
Compute Mantel Correlation(s)
PermutationTest
Permutation Test for Dissimilarity Matrices

Files in this package

MantelCorr/DESCRIPTION
MantelCorr/NAMESPACE
MantelCorr/R
MantelCorr/R/ClusterGeneList.r
MantelCorr/R/ClusterList.r
MantelCorr/R/DistMatrices.r
MantelCorr/R/GetClusters.r
MantelCorr/R/MantelCorrs.r
MantelCorr/R/PermutationTest.r
MantelCorr/build
MantelCorr/build/vignette.rds
MantelCorr/data
MantelCorr/data/GolubTrain.rda
MantelCorr/inst
MantelCorr/inst/doc
MantelCorr/inst/doc/MantelCorrVignette.R
MantelCorr/inst/doc/MantelCorrVignette.Rnw
MantelCorr/inst/doc/MantelCorrVignette.pdf
MantelCorr/man
MantelCorr/man/ClusterGeneList.Rd
MantelCorr/man/ClusterList.Rd
MantelCorr/man/DistMatrices.Rd
MantelCorr/man/GetClusters.Rd
MantelCorr/man/GolubTrain.Rd
MantelCorr/man/MantelCorrs.Rd
MantelCorr/man/PermutationTest.Rd
MantelCorr/vignettes
MantelCorr/vignettes/MantelCorrVignette.Rnw
MantelCorr/vignettes/MantelCorrVignette.ps