MicrobiotaProcess: an R package for analysis, visualization and biomarker discovery of microbiome

MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. In addition, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.

Package details

AuthorShuangbin Xu [aut, cre] (<https://orcid.org/0000-0003-3513-5362>), Guangchuang Yu [aut, ctb] (<https://orcid.org/0000-0002-6485-8781>)
Bioconductor views FeatureExtraction Microbiome MultipleComparison Software Visualization
MaintainerShuangbin Xu <xshuangbin@163.com>
LicenseGPL (>= 3.0)
Version1.2.2
URL https://github.com/YuLab-SMU/MicrobiotaProcess/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MicrobiotaProcess")

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MicrobiotaProcess documentation built on April 18, 2021, 6 p.m.