NBSpliceRes-constructor: NBSpliceRes constructor

Description Usage Arguments Value Note Author(s) See Also Examples

Description

NBSpliceRes creates an object to store the results of differential expression analysis performed by the NBTest function.

Usage

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Arguments

results

Data.frame with NBTest results of expressed isoforms.

lowExpIndex

Numeric indicating the positions of low expressed isoforms.

contrast

Character indicating the contrast used for NBTest.

dispersion

Numeric with the estimated gene dispersions.

Value

NBSpliceRes object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino merino.gabriela33@gmail.com, and Elmer A. Fernandez efernandez@bdmg.com.ar

See Also

NBSpliceRes-class

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, myDSResults, plotGeneResults, plotRatiosDisp, plotVolcano

Examples

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data(myDSResults, package="NBSplice")
myResults<-results(myDSResults, filter=FALSE)
myLowExpIdx<-lowExpIndex(myDSResults)
myContrast<-contrast(myDSResults)
myDispersion<-disp(myDSResults)
myNewDSResults<-NBSpliceRes(myResults, myLowExpIdx, myContrast, myDispersion)

NBSplice documentation built on Nov. 8, 2020, 8:07 p.m.