NBSpliceRes-plotVolcano: Method to obtain the Volcano Plot.

Description Usage Arguments Value Note Author(s) See Also Examples

Description

plotVolcano returns a generalized volcano plot where the x-axis represents the difference between isoform's relative expression in the contrasted conditions. Isoforms are colored according to the differential splicing status of the gene where they come from.

Usage

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plotVolcano(myNBRes, adjusted = TRUE, p.value = 0.05)

## S4 method for signature 'NBSpliceRes'
plotVolcano(myNBRes, adjusted = TRUE,
    p.value = 0.05)

Arguments

myNBRes

NBSpliceRes class object.

adjusted

Logical indicating if adjusted p values should be used.

p.value

Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate.

Value

A ggplot object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp

Examples

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data(myDSResults, package="NBSplice")

g<-plotVolcano(myDSResults)
if(interactive()){
g
}

NBSplice documentation built on Nov. 8, 2020, 8:07 p.m.