NBSpliceRes-plotRatiosDisp: Plot the dispersion of isoform's relative expression for...

In NBSplice: Negative Binomial Models to detect Differential Splicing

Description

plotRatiosDisp returns a ggplot object with the scatter plot of isoform's relative expression in the contrasted conditions. Isoforms are colored according to the differential splicing status of the gene where they come from.

Usage

plotRatiosDisp(myNBRes, adjusted = TRUE, p.value = 0.05)

## S4 method for signature 'NBSpliceRes'
plotRatiosDisp(myNBRes, adjusted = TRUE,
    p.value = 0.05)

Arguments

myNBRes	NBSpliceRes class object.
adjusted	Logical indicating if adjusted p values should be used.
p.value	Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate.

Value

A ggplot object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail] and Elmer A. Fernandez [e-mail]

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, NBSpliceRes, myDSResults, plotGeneResults, plotVolcano

Examples

data(myDSResults, package="NBSplice")

g<-plotRatiosDisp(myDSResults)
if(interactive()){
g
}

NBSplice documentation built on Nov. 8, 2020, 8:07 p.m.