API for NanoMethViz
Visualise methlation data from Oxford Nanopore sequencing
| Global functions | |
|---|---|
| .agg_geom_smooth | Source code |
| .get_edger_col_names | Source code |
| .get_edger_row_names | Source code |
| .get_features_with_rel_pos | Source code |
| .get_ggplot_range_x | Source code |
| .get_me_mat | Source code |
| .get_un_mat | Source code |
| .plot_gene | Source code |
| .plot_region | Source code |
| .split_rows | Source code |
| NanoMethResult | Man page Source code |
| NanoMethResult-class | Man page |
| NanoMethViz | Man page |
| NanoMethViz-package | Man page |
| assert_has_columns | Source code |
| bsseq_to_edger | Man page Source code |
| bsseq_to_log_methy_ratio | Man page Source code |
| can_open_sql | Source code |
| can_open_tabix | Source code |
| convert_methy_format | Man page Source code |
| convert_methy_to_dss | Source code |
| convert_methy_to_dss_cpp | Source code |
| create_bsseq_from_files | Source code |
| create_tabix_file | Man page Source code |
| exons | Man page |
| exons,NanoMethResult-method | Man page |
| expand_motifs | Source code |
| extract_file_names | Source code |
| f5c_col_types | Source code |
| get_exons_homo_sapiens | Man page Source code |
| get_exons_mus_musculus | Man page Source code |
| guess_methy_source | Source code |
| load_example_nanomethresult | Man page Source code |
| logit | Source code |
| lollipop | Source code |
| megalodon_col_types | Source code |
| methy | Man page |
| methy,NanoMethResult-method | Man page |
| methy_col_names | Man page Source code |
| methy_col_types | Source code |
| methy_to_bsseq | Man page Source code |
| nanopolish_col_types | Source code |
| plot_agg_regions | Man page Source code |
| plot_agg_regions_sample_grouped | Man page Source code |
| plot_feature | Source code |
| plot_gene | Man page |
| plot_gene,NanoMethResult,character-method | Man page |
| plot_gene_annotation | Source code |
| plot_grange | Man page Source code |
| plot_methylation_internal | Source code |
| plot_region | Man page |
| plot_region,NanoMethResult,character,numeric,numeric-method | Man page |
| plot_region,NanoMethResult,factor,numeric,numeric-method | Man page |
| query_exons | Man page |
| query_exons_gene_id | Man page Source code |
| query_exons_region | Man page Source code |
| query_exons_symbol | Man page Source code |
| query_methy | Man page Source code |
| query_methy_sqlite | Source code |
| query_methy_tabix | Source code |
| raw_methy_to_tabix | Man page Source code |
| reformat_f5c | Source code |
| reformat_megalodon | Source code |
| reformat_nanopolish | Source code |
| samples | Man page |
| samples,NanoMethResult-method | Man page |
| sort_methy_file | Man page Source code |
| tabix_compress | Source code |
| tabix_index | Source code |
| timed_log | Source code |
| vec_zip | Source code |
