plot_gene: Plot gene

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

Plot gene

Usage

plot_gene(x, gene, ...)

## S4 method for signature 'NanoMethResult,character'
plot_gene(
  x,
  gene,
  window = 0.3,
  anno_regions = NULL,
  spaghetti = FALSE,
  span = NULL,
  gene_anno = TRUE
)

Arguments

x	the NanoMethResult object.
gene	the gene symbol for the gene to plot.
...	additional arguments
window	the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length.
anno_regions	the data.frame of regions to annotate.
spaghetti	whether or not individual reads should be shown.
span	the span for loess smoothing.
gene_anno	whether or not gene annotation tracks are plotted.

Value

a patchwork plot.

a patchwork plot.

Examples

nmr <- load_example_nanomethresult()
plot_gene(nmr, "Peg3")

nmr <- load_example_nanomethresult()
plot_gene(nmr, "Peg3")

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.