NanoMethViz-package: NanoMethViz: Visualise methlation data from Oxford Nanopore...

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore sequencing. It can be used to explore methylation patterns from reads derived from Oxford Nanopore direct DNA sequencing with methylation called by callers including nanopolish, f5c and megalodon. The plots in this package allow the visualisation of methylation profiles aggregated over experimental groups and across classes of genomic features.

Details

The main plotting functions in this package are plot_gene() and plot_region().

• See vignette("ImportingData", package = "NanoMethViz") for how to import data from Nanopolish and f5c.

• See vignette("Introduction", package = "NanoMethViz") for how to create visualisations using this package.

Author(s)

Maintainer: Shian Su [e-mail]

See Also

Useful links:

• https://github.com/shians/NanoMethViz

• Report bugs at https://github.com/Shians/NanoMethViz/issues

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.