plot_grange: Plot GRanges
In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing
Description
Usage
Arguments
Value
Examples
Description
Plot GRanges
Usage
1
plot_grange(x, grange, anno_regions = NULL, spaghetti = FALSE, span = NULL)
Arguments
x
the NanoMethResult object.
grange
the GRanges object with one entry.
anno_regions
the data.frame of regions to be annotated
spaghetti
whether or not individual reads should be shown.
span
the span for loess smoothing.
Value
a ggplot object.
a ggplot object.
Examples
1
2
nmr <- load_example_nanomethresult()
plot_grange(nmr, GRanges("chr7:6703892-6730431"))
NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.
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Description Usage Arguments Value Examples
Description
Plot GRanges
Usage
1 | plot_grange(x, grange, anno_regions = NULL, spaghetti = FALSE, span = NULL)
|
Arguments
x |
the NanoMethResult object. |
grange |
the GRanges object with one entry. |
anno_regions |
the data.frame of regions to be annotated |
spaghetti |
whether or not individual reads should be shown. |
span |
the span for loess smoothing. |
Value
a ggplot object.
a ggplot object.
Examples
1 2 | nmr <- load_example_nanomethresult()
plot_grange(nmr, GRanges("chr7:6703892-6730431"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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