NanoMethResult-class: Nanopore Methylation Result

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

A NanoMethResult object stores data used for NanoMethViz visualisation. It contains stores a path to the methylation data, sample information and optional exon information. The object is constructed using the NanoMethResult() constructor function described in "Usage".

Usage

NanoMethResult(methy, samples, exons = NULL)

## S4 method for signature 'NanoMethResult'
methy(object)

## S4 method for signature 'NanoMethResult'
samples(object)

## S4 method for signature 'NanoMethResult'
exons(object)

Arguments

methy	the path to the methylation tabix file.
samples	the data.frame of sample annotation containg at least columns sample and group.
exons	(optional) the data.frame of exon information containing at least columns gene_id, chr, strand, start, end, transcript_id and symbol.
object	the NanoMethResult object.

Value

a NanoMethResult object to be used with plotting functions

the path to the methylation data.

the sample annotation.

the exon annotation.

Functions

• NanoMethResult: Constructor

• methy,NanoMethResult-method: methylation data path getter.

• samples,NanoMethResult-method: sample annotation getter.

• exons,NanoMethResult-method: exon annotation getter.

Slots

methy

the path to the methylation tabix file.

samples

the data.frame of sample annotation containg at least columns sample and group.

exons

the data.frame of exon information containing at least columns gene_id, chr, strand, start, end, transcript_id and symbol.

Examples

x <- load_example_nanomethresult()
methy(x)

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.