bsseq_to_log_methy_ratio: Convert BSseq object to log-methylation-ratio matrix
In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Creates a log-methylation-ratio matrix from a BSseq object that is useful for dimensionality reduction plots.

1	bsseq_to_log_methy_ratio(bsseq, prior_count = 2)

`bsseq`	the BSseq object.
`prior_count`	the prior count added to avoid taking log of 0.

a matrix containing log-methylation-ratios.

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methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
bsseq <- methy_to_bsseq(methy)
log_m_ratio <- bsseq_to_log_methy_ratio(bsseq)

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.

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