Man pages for NanoMethViz
Visualise methlation data from Oxford Nanopore sequencing
| bsseq_to_edger | Convert BSseq object to edgeR methylation matrix |
| bsseq_to_log_methy_ratio | Convert BSseq object to log-methylation-ratio matrix |
| convert_methy_format | Convert methylation calls to NanoMethViz format |
| create_tabix_file | Create a tabix file using methylation calls |
| exons | Get exon annotation |
| get_exons_homo_sapiens | Get exon annotations for homo sapiens |
| get_exons_mus_musculus | Get exon annotations for mus musculus |
| load_example_nanomethresult | Load an example NanoMethResult object |
| methy | Get methylation data |
| methy_col_names | Column names for methylation data |
| methy_to_bsseq | Create BSSeq object from methylation tabix file |
| NanoMethResult-class | Nanopore Methylation Result |
| NanoMethViz-package | NanoMethViz: Visualise methlation data from Oxford Nanopore... |
| plot_agg_regions | Plot aggregate regions |
| plot_agg_regions_sample_grouped | Plot aggregate regions with grouped samples |
| plot_gene | Plot gene |
| plot_grange | Plot GRanges |
| plot_region | Plot region |
| query_exons | Query exons |
| query_methy | Query methylation data |
| raw_methy_to_tabix | Convert methylation file to tabix format |
| samples | Get sample annotation |
| sort_methy_file | Sort methylation file |
