plotSigScatter: Takes an NormalyzerStatistics instance and generates and...
In NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics
Description
Usage
Arguments
Value
View source: R/calculateStatistics.R
Description
Takes an NormalyzerStatistics instance and generates and prints a
volcano plot
Usage
1
2
plotSigScatter(nst, jobName, currentLayout, pageno, type = "Volcano",
sigThres = 0.1, sigThresType = "fdr", log2FoldThres = 0)
Arguments
nst
NormalyzerDE statistics object.
jobName
Name of processing run.
currentLayout
Layout used for document.
pageno
Current page number.
type
Specify whether to plot 'Volcano' or 'MA'.
sigThres
FDR threshold for DE coloring.
Value
None
NormalyzerDE documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Usage Arguments Value
View source: R/calculateStatistics.R
Description
Takes an NormalyzerStatistics instance and generates and prints a volcano plot
Usage
1 2 | plotSigScatter(nst, jobName, currentLayout, pageno, type = "Volcano",
sigThres = 0.1, sigThresType = "fdr", log2FoldThres = 0)
|
Arguments
nst |
NormalyzerDE statistics object. |
jobName |
Name of processing run. |
currentLayout |
Layout used for document. |
pageno |
Current page number. |
type |
Specify whether to plot 'Volcano' or 'MA'. |
sigThres |
FDR threshold for DE coloring. |
Value
None
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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