OVESEG-package: OVESEG: A package for marker gene test.
In OVESEG: OVESEG-test to detect tissue/cell-specific markers
Description
Function OVESEGtest performs OVESEG-test for expression
profiles from multiple groups to detect subtype-specific marker genes.
While it may take a long time to execute permutations for p-value estimation,
users can apply OVESEGtstat to obtain OVESEG-test statistics
to rank genes and apply postProbNull to obtain each gene's
posterior probabilities of component null hypotheses.
nullDistri estimates probabilities of any one group being
upregulated under null hypotheses.
patternDistri estimates probabilities of all kinds of
upregulation patterns among groups.
References
Chen, L., Herrington, D., Clarke, R., Yu, G., and Wang, Y.
(2019). <e2><80><9c>Data-Driven Robust Detection of Tissue/Cell-Specific Markers.<e2><80><9d>
bioRxiv. https://doi.org/10.1101/517961.
OVESEG documentation built on Nov. 8, 2020, 4:51 p.m.
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Description
Function OVESEGtest performs OVESEG-test for expression
profiles from multiple groups to detect subtype-specific marker genes.
While it may take a long time to execute permutations for p-value estimation,
users can apply OVESEGtstat to obtain OVESEG-test statistics
to rank genes and apply postProbNull to obtain each gene's
posterior probabilities of component null hypotheses.
nullDistri estimates probabilities of any one group being
upregulated under null hypotheses.
patternDistri estimates probabilities of all kinds of
upregulation patterns among groups.
References
Chen, L., Herrington, D., Clarke, R., Yu, G., and Wang, Y. (2019). <e2><80><9c>Data-Driven Robust Detection of Tissue/Cell-Specific Markers.<e2><80><9d> bioRxiv. https://doi.org/10.1101/517961.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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