nullDistri: Probability of one group being upregulated under null
In OVESEG: OVESEG-test to detect tissue/cell-specific markers
Description
Usage
Arguments
Details
Value
Examples
Description
This function estimates probabilities of any one group being upregulated
than other groups under null hypotheses.
Usage
1
nullDistri(ppnull)
Arguments
ppnull
a list returned by postProbNull or
OVESEGtest.
Details
The probability of one group being upregulated under null
hypotheses is calculated by accumulating and normalizing genewise posterior
probability of null hypotheses. The group with higher probability tends to
get more False Positive MGs.
Value
a numeric vector indicating probabilities of each group being
upregulated than others under null hypotheses.
Examples
1
2
3
data(RocheBT)
ppnull <- postProbNull(RocheBT$y, RocheBT$group, alpha='moderated')
pk <- nullDistri(ppnull)
OVESEG documentation built on Nov. 8, 2020, 4:51 p.m.
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Description Usage Arguments Details Value Examples
Description
This function estimates probabilities of any one group being upregulated than other groups under null hypotheses.
Usage
1 | nullDistri(ppnull)
|
Arguments
ppnull |
a list returned by |
Details
The probability of one group being upregulated under null hypotheses is calculated by accumulating and normalizing genewise posterior probability of null hypotheses. The group with higher probability tends to get more False Positive MGs.
Value
a numeric vector indicating probabilities of each group being upregulated than others under null hypotheses.
Examples
1 2 3 | data(RocheBT)
ppnull <- postProbNull(RocheBT$y, RocheBT$group, alpha='moderated')
pk <- nullDistri(ppnull)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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