countBT: RNAseq count data downsampled from GSE60424

In OVESEG: OVESEG-test to detect tissue/cell-specific markers

Description

Three cell subtypes (B cells, CD4+ T cells, CD8+ T cells) were purified from 20 fresh blood samples. RNA was extracted from each of these cell subsets and processed into RNA sequencing libraries (Illumina TruSeq). Sequencing libraries were analyzed on an Illumina HiScan, with a target read depth of ~20M reads. Reads were demultiplexed, mapped to human gene models (ENSEMBL), and tabulated using HTSeq. We downsample the original data to 10000 genes. Subtype labels for purified populations are also included. (Data generation script can be found in ./data_raw folder.)

Usage

data(countBT)

Format

A list with one count mixture (count) and a categorical vector giving subtypes (group).

References

Linsley et al. PLoS One 2014;9(10):e109760. PMID: 25314013

OVESEG documentation built on Nov. 8, 2020, 4:51 p.m.