permfunc: Internal function for one permutation task

In OVESEG: OVESEG-test to detect tissue/cell-specific markers

Description

Internal function for one permutation task

Usage

permfunc(p, y, group, weights, alpha, combM, geneSubset, seeds)

Arguments

p	an integer indicating permutation index
y	an expressions matrix
group	a integer vector indicating group labels
weights	optional numeric matrix containing prior weights
alpha	parameter specifying within-group variance estimator to be used
combM	a integer matrix with each row giving one choice of M groups
geneSubset	a integer vector indicating the probe pattern of combM
seed	an integer seed for the random number generator

Value

test statistics and upregulated group indexes after one permutaion

OVESEG documentation built on Nov. 8, 2020, 4:51 p.m.