Man pages for Onassis
OnASSIs Ontology Annotation and Semantic SImilarity software
| annotate | 'annotate' |
| annotateDF | 'annotateDF' |
| CaseMatch | 'CaseMatch' |
| CMdictionary | 'CMdictionary' |
| CMdictionary-class | Class that stores a Conceptmapper dictionary |
| CMoptions | 'CMoptions' |
| CMoptions-class | Class to set the options to run the EntityFinder |
| collapse | 'collapse' |
| compare | 'compare' |
| dictInfo | Get and Set the dicInfo slot for the 'CMdictionary' class |
| dictionary | 'dictionary<-' |
| dict_location | 'dict_location' |
| dictRef | 'dictRef' |
| dictTypes | 'dictTypes' |
| entities | 'entities<-' |
| EntityFinder | 'EntityFinder' |
| EntityFinder-class | EntityFinder class to create a Conceptmapper instance |
| experiment_types | 'experiment_types' |
| filterconcepts | 'filterconcepts' |
| filterTerms | 'filterTerms' |
| FindAllMatches | Method FindAllMatches |
| findEntities | Method findEntities |
| findHealthy | 'findHealthy' |
| GEOHandler-functions | 'connectToGEODB' |
| getGEOMetadata | 'getGEOMetadata' |
| groupConfig | 'groupConfig' |
| groupsim | Method groupsim |
| groupwiseConfigRef | 'groupwiseConfigRef' |
| icConfig | 'icConfig' |
| listCMOptions | 'listCMOptions' |
| listSimilarities | 'listSimilarities' |
| mergeonassis | 'mergeonassis' |
| multisim | 'multisim' |
| Onassis | OnASSiS (Ontology Annotations and Semantic Similarity... |
| Onassis-class | Onassis-class |
| ontology | 'ontology<-' |
| OrderIndependentLookup | 'OrderIndependentLookup' |
| organism_types | 'organism_types' |
| pairsim | 'pairsim' |
| pairwiseConfig | 'pairwiseConfig' |
| pairwiseConfigRef | 'pairwiseConfigRef' |
| paramValueIndex | Method paramValueIndex |
| samplesim | 'samplesim' |
| scores | 'scores<-' |
| SearchStrategy | Method SearchStrategy |
| sim | 'sim' |
| simil | 'simil<-' |
| Similarity | 'Similarity' |
| Similarity-class | Similarity class to compute similarities between concepts in... |
| similarityInstance | 'similarityInstance' |
| Stemmer | Method Stemmer |
| StopWords | Method StopWords |
| SynonymType | Method SynonymType |
| typeSystemRef | Method typeSystemRef |
