EntityFinder is a class that wraps a Conceptmapper pipeline using the CCP UIMA Type System https://github.com/UCDenver-ccp/ccp-nlp. The pipeline includes a sentence detector, offset tokenizer and retrieves concepts from dictionaries built from OBO/OWL formatted ontology files.
The following methods can be applied to EntityFinder
The methods can be automatically called using the function
The reference to the Java object representing the type system
finder <- new('EntityFinder')
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