findHealthy: 'findHealthy'
In Onassis: OnASSIs Ontology Annotation and Semantic SImilarity software
Description
Usage
Arguments
Value
Examples
Description
findHealthy annotates as 'Healthy' the samples whose metadata matches with one of the elements of a list of sentence used to describe the normal disease state or healthy.
Usage
1
findHealthy(metadata_df)
Arguments
metadata_df
a data frame where the first column corresponds to the identifier of a sample #' and the other columns the metadata relative to the sample
Value
a data frame with healthy samples annotated as 'Healthy'
Examples
1
2
3
4
metadatafile <- readRDS(system.file('extdata', 'vignette_data',
'GEO_human_chip.rds', package='Onassis'))
healthy_gsms <- findHealthy(metadatafile)
Onassis documentation built on Nov. 8, 2020, 8:18 p.m.
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Description Usage Arguments Value Examples
Description
findHealthy annotates as 'Healthy' the samples whose metadata matches with one of the elements of a list of sentence used to describe the normal disease state or healthy.
Usage
1 | findHealthy(metadata_df)
|
Arguments
metadata_df |
a data frame where the first column corresponds to the identifier of a sample #' and the other columns the metadata relative to the sample |
Value
a data frame with healthy samples annotated as 'Healthy'
Examples
1 2 3 4 | metadatafile <- readRDS(system.file('extdata', 'vignette_data',
'GEO_human_chip.rds', package='Onassis'))
healthy_gsms <- findHealthy(metadatafile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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