PREDA
Position Related Data Analysis

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150
Source code
80
Man pages
60
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PREDA: Position Related Data Analysis
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API

API for PREDA
Position Related Data Analysis

Global functions
CleanNAAnnotationDataframe Source code
DataForPREDA-class Man page
DataForPREDA2GenomicAnnotationsForPREDA Man page
DataForPREDA2GenomicAnnotationsForPREDA,DataForPREDA-method Man page
DataForPREDA2StatisticsForPREDA Man page
DataForPREDA2StatisticsForPREDA,DataForPREDA-method Man page
DataForPREDA2dataframe Man page
DataForPREDA2dataframe,DataForPREDA-method Man page
DataForPREDAMedianCenter Man page
DataForPREDAMedianCenter,DataForPREDA-method Man page
EvaluateSimulationPerformance Source code
GE_computeStatistic_onMatrix Source code
GE_sample_rows Source code
GE_simulations_samplingColumns_onMatrix Source code
GenomicAnnotations-class Man page
GenomicAnnotations2GenomicAnnotationsForPREDA Man page
GenomicAnnotations2GenomicAnnotationsForPREDA,GenomicAnnotations Man page
GenomicAnnotations2dataframe Man page
GenomicAnnotations2dataframe,GenomicAnnotations-method Man page
GenomicAnnotations2dataframe,GenomicAnnotationsForPREDA-method Man page
GenomicAnnotations2reference_positions Man page
GenomicAnnotations2reference_positions,GenomicAnnotations-method Man page
GenomicAnnotationsExtract Man page
GenomicAnnotationsExtract,GenomicAnnotations-method Man page
GenomicAnnotationsFilter_neg Man page
GenomicAnnotationsFilter_neg,DataForPREDA-method Man page
GenomicAnnotationsFilter_neg,GenomicAnnotations-method Man page
GenomicAnnotationsFilter_neg,GenomicAnnotationsForPREDA-method Man page
GenomicAnnotationsFilter_pos Man page
GenomicAnnotationsFilter_pos,DataForPREDA-method Man page
GenomicAnnotationsFilter_pos,GenomicAnnotations-method Man page
GenomicAnnotationsFilter_pos,GenomicAnnotationsForPREDA-method Man page
GenomicAnnotationsForPREDA-class Man page
GenomicAnnotationsForPREDA2GenomicAnnotations Man page
GenomicAnnotationsForPREDA2GenomicAnnotations,GenomicAnnotations Man page
GenomicAnnotationsForPREDA2PREDAResults Man page
GenomicAnnotationsForPREDA2PREDAResults,GenomicAnnotationsForPRE Man page
GenomicAnnotationsForPREDA2dataframe Man page
GenomicAnnotationsForPREDA2dataframe,GenomicAnnotationsForPREDA- Man page
GenomicAnnotationsForPREDAFromfile Man page Source code
GenomicAnnotationsFromLibrary Man page Source code
GenomicAnnotationsFromdataframe Man page Source code
GenomicAnnotationsFromfile Man page Source code
GenomicAnnotationsSortAndCleanNA Man page
GenomicAnnotationsSortAndCleanNA,DataForPREDA-method Man page
GenomicAnnotationsSortAndCleanNA,GenomicAnnotations-method Man page
GenomicAnnotationsSortAndCleanNA,GenomicAnnotationsForPREDA-meth Man page
GenomicAnnotationsSortAndCleanNA,PREDADataAndResults-method Man page
GenomicAnnotationsSortAndCleanNA,PREDAResults-method Man page
GenomicRegions-class Man page
GenomicRegions2dataframe Man page Source code
GenomicRegionsAnnotate Man page
GenomicRegionsAnnotate,GenomicRegions,GenomicAnnotations-method Man page
GenomicRegionsChrNumber Man page
GenomicRegionsChrNumber,GenomicRegions-method Man page
GenomicRegionsComparison Man page
GenomicRegionsComparison,GenomicRegions,GenomicRegions-method Man page
GenomicRegionsCreateRegionsIds Man page
GenomicRegionsCreateRegionsIds,GenomicRegions-method Man page
GenomicRegionsFilter_neg Man page
GenomicRegionsFilter_neg,GenomicRegions-method Man page
GenomicRegionsFilter_pos Man page
GenomicRegionsFilter_pos,GenomicRegions-method Man page
GenomicRegionsFindOverlap Man page Source code
GenomicRegionsFromdataframe Man page Source code
GenomicRegionsFromfile Man page Source code
GenomicRegionsNumber Man page
GenomicRegionsNumber,GenomicRegions-method Man page
GenomicRegionsSpan Man page
GenomicRegionsSpan,GenomicRegions-method Man page
GenomicRegionsTotalSpan Man page
GenomicRegionsTotalSpan,GenomicRegions-method Man page
MergeStatisticAnnotations2DataForPREDA Man page Source code
PREDADataAndResults-class Man page
PREDADataAndResults2dataframe Man page
PREDADataAndResults2dataframe,PREDADataAndResults-method Man page
PREDAResults-class Man page
PREDAResults2GenomicRegions Man page
PREDAResults2GenomicRegions,PREDAResults-method Man page
PREDAResults2GenomicRegionsSingle Man page
PREDAResults2GenomicRegionsSingle,PREDAResults-method Man page
PREDAResults2PREDADataAndResults Man page
PREDAResults2PREDADataAndResults,PREDAResults-method Man page
PREDAResults2dataframe Man page
PREDAResults2dataframe,PREDAResults-method Man page
PREDAResultsGetObservedFlags Man page
PREDAResultsGetObservedFlags,PREDAResults-method Man page
PREDA_main Man page Source code
PREDA_main_permRows Source code
PREDA_main_permSamples Source code
PREDA_multTestCorrection Source code
PREDA_quantsmoothStat Source code
PREDA_quantsmoothStatPerm Source code
PREDA_smoothStat Source code
PREDA_smoothStatPerm Source code
PREDA_splineStat Source code
PREDA_splineStatPerm Source code
RMAwithCDFfilter Source code
SODEGIR_GEstatistics Man page
SODEGIR_GEstatistics,ExpressionSet-method Man page
SODEGIRpreprocessingGE Man page Source code
SortAnnotationDataframe Source code
StatisticsForPREDA-class Man page
StatisticsForPREDA2dataframe Man page
StatisticsForPREDA2dataframe,StatisticsForPREDA-method Man page
StatisticsForPREDAFilterColumns_neg Man page
StatisticsForPREDAFilterColumns_neg,DataForPREDA-method Man page
StatisticsForPREDAFilterColumns_neg,StatisticsForPREDA-method Man page
StatisticsForPREDAFilterColumns_pos Man page
StatisticsForPREDAFilterColumns_pos,DataForPREDA-method Man page
StatisticsForPREDAFilterColumns_pos,StatisticsForPREDA-method Man page
StatisticsForPREDAFromdataframe Man page Source code
StatisticsForPREDAFromfile Man page Source code
analysesNames Man page
analysesNames,PREDAResults-method Man page
analysesNames,StatisticsForPREDA-method Man page
computeDatasetSignature Man page
computeDatasetSignature,GenomicAnnotationsForPREDA-method Man page
datasetSignatureFromFlags Source code
datasetSignatureFromFlags_getFrequencies Source code
eset2GenomicAnnotations Man page
eset2GenomicAnnotations,ExpressionSet-method Man page
genomePlot Man page
genomePlot,GenomicAnnotationsForPREDA-method Man page
genomePlot_improved Source code
getExpectedSmoothFunction Source code
getExpectedSmoothFunction_runmean Source code
getObservedSmoothFunction Source code
getObservedSmoothFunction_runmean Source code
getPermutationMatrix Source code
getStardadizeFunction Source code
getStatisticByName Man page
getStatisticByName,StatisticsForPREDA-method Man page
preprocessingGE Man page Source code
statisticsForPREDAfromEset Man page
statisticsForPREDAfromEset,ExpressionSet-method Man page
PREDA documentation built on Nov. 8, 2020, 7:40 p.m.

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