Files in PREDA

Position Related Data Analysis

R/GenomicAnnotationsSortAndCleanNA.R R/analysesNames.R R/GenomicAnnotationsForPREDA2PREDAResults.R R/datasetSignatureFromFlags.R R/GenomicAnnotationsForPREDA2GenomicAnnotations.R R/SODEGIRpreprocessingGE.R R/GenomicAnnotationsForPREDA2dataframe.R R/GenomicRegionsNumber.R R/PREDA_main.R R/getExpectedSmoothFunction.R R/PREDA_quantsmoothStat.R R/DataForPREDA2dataframe.R R/GenomicAnnotationsFilter_pos.R R/GE_computeStatistic.R R/PREDA_main_permRows.R R/PREDA_multTestCorrection.R R/simulations.R R/RMAwithCDFfilter.R R/GenomicAnnotationsFilter_neg.R R/AllGenerics.R R/PREDAResults2dataframe.R R/StatisticsForPREDAFromfile.R R/getObservedSmoothFunction.R R/MergeStatisticAnnotations2DataForPREDA.R R/GenomicRegionsFilter_neg.R R/GenomicAnnotationsFromdataframe.R R/PREDAResultsGetObservedFlags.R R/computeDatasetSignature.R R/PREDAResults2PREDADataAndResults.R R/GenomicRegionsAnnotate.R R/preprocessingGE.R R/getExpectedSmoothFunction_runmean.R R/GenomicAnnotations2GenomicAnnotationsForPREDA.R R/StatisticsForPREDAFromdataframe.R R/PREDAResults2GenomicRegionsSingle.R R/getObservedSmoothFunction_runmean.R R/compareFunctionFromStatisticsForPREDA.R R/initialize-methods.R R/PREDA_main_permSamples.R R/StatisticsForPREDA2dataframe.R R/CleanNAAnnotationDataframe.R R/GenomicRegionsFindOverlap.R R/genomePlot_improved.R R/GEhighWeakExpressionWorkflow.R R/GenomicRegionsFilter_pos.R R/eset2GenomicAnnotations.R R/genomePlot.R R/GenomicAnnotationsExtract.R R/GenomicAnnotationsForPREDAFromfile.R R/StatisticsForPREDAFilterColumns_neg.R R/PREDA_splineStatPerm.R R/AllClasses.R R/PREDA_smoothStat.R R/getStatisticByName.R R/PREDA_smoothStatPerm.R R/GenomicRegionsComparison.R R/PREDADataAndResults2dataframe.R R/PREDA_splineStat.R R/GenomicAnnotations2reference_positions.R R/PREDAResults2GenomicRegions.R R/GenomicRegionsSpan.R R/GenomicRegionsFromdataframe.R R/SODEGIR_GEstatistics.R R/PREDA_quantsmoothStatPerm.R R/GenomicAnnotationsFromLibrary.R R/statisticsForPREDAfromEset.R R/GenomicRegionsChrNumber.R R/GenomicRegions2dataframe.R R/SortAnnotationDataframe.R R/GenomicRegionsCreateRegionsIds.R R/DataForPREDA2StatisticsForPREDA.R R/GenomicAnnotations2dataframe.R R/DataForPREDA2GenomicAnnotationsForPREDA.R R/GenomicAnnotationsForPREDAGetExpectedFlags.R R/GenomicRegionsFromfile.R R/GenomicRegionsTotalSpan.R R/GEsimulationsWorkflow.R R/GenomicAnnotationsFromfile.R R/StatisticsForPREDAFilterColumns_pos.R man/GenomicRegionsSpan.Rd man/analysesNames.Rd man/GenomicAnnotationsForPREDA-class.Rd man/PREDAResults2dataframe.Rd man/DataForPREDA2StatisticsForPREDA.Rd man/GenomicAnnotationsFromLibrary.Rd man/GenomicAnnotations-class.Rd man/StatisticsForPREDAFromdataframe.Rd man/StatisticsForPREDA2dataframe.Rd man/GenomicRegionsCreateRegionsIds.Rd man/GenomicRegionsFromdataframe.Rd man/GenomicAnnotations2dataframe.Rd man/PREDAResultsGetObservedFlags.Rd man/GenomicRegions2dataframe.Rd man/preprocessingGE.Rd man/GenomicRegionsFromfile.Rd man/GenomicAnnotationsForPREDA2dataframe.Rd man/GenomicAnnotationsFilter_pos.Rd man/DataForPREDAMedianCenter.Rd man/GenomicRegions-class.Rd man/getStatisticByName.Rd man/DataForPREDA-class.Rd man/GenomicRegionsFilter_neg.Rd man/computeDatasetSignature.Rd man/PREDAResults2GenomicRegionsSingle.Rd man/GenomicAnnotationsFilter_neg.Rd man/GenomicRegionsFilter_pos.Rd man/PREDAResults2PREDADataAndResults.Rd man/PREDAResults2GenomicRegions.Rd man/GenomicRegionsFindOverlap.Rd man/StatisticsForPREDAFilterColumns_neg.Rd man/GenomicRegionsAnnotate.Rd man/PREDADataAndResults-class.Rd man/PREDAResults-class.Rd man/GenomicAnnotationsForPREDA2PREDAResults.Rd man/StatisticsForPREDAFilterColumns_pos.Rd man/GenomicAnnotationsForPREDA2GenomicAnnotations.Rd man/GenomicAnnotations2GenomicAnnotationsForPREDA.Rd man/eset2GenomicAnnotations.Rd man/genomePlot.Rd man/statisticsForPREDAfromEset.Rd man/GenomicRegionsComparison.Rd man/SODEGIRpreprocessingGE.Rd man/GenomicAnnotationsSortAndCleanNA.Rd man/GenomicAnnotationsFromfile.Rd man/PREDADataAndResults2dataframe.Rd man/StatisticsForPREDA-class.Rd man/GenomicAnnotationsForPREDAFromfile.Rd man/GenomicRegionsTotalSpan.Rd man/DataForPREDA2GenomicAnnotationsForPREDA.Rd man/GenomicRegionsChrNumber.Rd man/PREDA_main.Rd man/StatisticsForPREDAFromfile.Rd man/SODEGIR_GEstatistics.Rd man/MergeStatisticAnnotations2DataForPREDA.Rd man/GenomicRegionsNumber.Rd man/DataForPREDA2dataframe.Rd man/GenomicAnnotationsExtract.Rd man/GenomicAnnotations2reference_positions.Rd man/GenomicAnnotationsFromdataframe.Rd inst/doc/PREDAtutorial.pdf inst/doc/PREDAclasses.pdf inst/doc/PREDAtutorial.R